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I've read quite a bit on glutamine's healing ability on intestines. The naturopath diagnosed me with leaky gut, but why would he be hesitant to prescribe glutamine? He said he just doesn't.

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Yes, glutamine can be very helpful for healing the gut. However, it has been implicated in exacerbating cancer or causing it to recur in a few studies. I used to take glutamine faithfully because it made my digestive system work optimally; however, since I suffer from recurrent cancer (and currently am suffering from metastatic cancer), I stopped using it. I don't know if this is why your naturopath is hesitant to prescribe it, but it's a possibility.

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